ENCFF004BLT
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | GM23338 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR722POQ |
| Description: | Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000362973.1 | ENST00000362973.1_96_117_+ | 96–117 | 1989.00 | 11.04 | 2.39 | 78.93 | RNA5SP358-201 | rRNA pseudogene | GM23338 (Cell line) |
| ENST00000363124.1 | ENST00000363124.1_17_32_+ | 17–32 | 160784.00 | 45.64 | 192.95 | 86.99 | RNA5SP145-201 | rRNA pseudogene | GM23338 (Cell line) |
| ENST00000363182.1 | ENST00000363182.1_1_32_+ | 1–32 | 263.00 | 11.86 | 0.32 | 100.0 | Y_RNA.105-201 | misc RNA | GM23338 (Cell line) |
| ENST00000363194.1 | ENST00000363194.1_1_32_+ | 1–32 | 73.00 | 25.61 | 0.09 | 100.0 | RNY4P9-201 | misc RNA | GM23338 (Cell line) |
| ENST00000363286.1 | ENST00000363286.1_63_116_+ | 63–116 | 324.00 | 2.99 | 0.39 | 100.0 | RNU5B-1-201 | snRNA | GM23338 (Cell line) |
| ENST00000363286.1 | ENST00000363286.1_68_116_+ | 68–116 | 24.00 | 0.22 | 0.03 | 100.0 | RNU5B-1-201 | snRNA | GM23338 (Cell line) |
| ENST00000363286.1 | ENST00000363286.1_1_78_+ | 1–78 | 892.00 | 8.24 | 1.07 | 55.96 | RNU5B-1-201 | snRNA | GM23338 (Cell line) |
| ENST00000363286.1 | ENST00000363286.1_1_69_+ | 1–69 | 61.00 | 0.56 | 0.07 | 100.0 | RNU5B-1-201 | snRNA | GM23338 (Cell line) |
| ENST00000363286.1 | ENST00000363286.1_1_86_+ | 1–86 | 1984.00 | 18.32 | 2.38 | 100.0 | RNU5B-1-201 | snRNA | GM23338 (Cell line) |
| ENST00000363286.1 | ENST00000363286.1_55_116_+ | 55–116 | 670.00 | 6.19 | 0.80 | 100.0 | RNU5B-1-201 | snRNA | GM23338 (Cell line) |
| ENST00000363293.1 | ENST00000363293.1_2_82_+ | 2–82 | 80.00 | 96.39 | 0.10 | 98.77 | SNORD115-18-201 | snoRNA | GM23338 (Cell line) |
| ENST00000363341.1 | ENST00000363341.1_1_36_+ | 1–36 | 1651.00 | 9.84 | 1.98 | 65.08 | RNY4P27-201 | misc RNA | GM23338 (Cell line) |
| ENST00000363341.1 | ENST00000363341.1_1_32_+ | 1–32 | 11370.00 | 67.74 | 13.64 | 92.77 | RNY4P27-201 | misc RNA | GM23338 (Cell line) |
| ENST00000363444.1 | ENST00000363444.1_74_99_+ | 74–99 | 889.00 | 22.20 | 1.07 | 100.0 | Y_RNA.136-201 | misc RNA | GM23338 (Cell line) |
| ENST00000363608.1 | ENST00000363608.1_2_82_+ | 2–82 | 19.00 | 44.19 | 0.02 | 100.0 | SNORD115-41-201 | snoRNA | GM23338 (Cell line) |
| ENST00000363633.1 | ENST00000363633.1_2_82_+ | 2–82 | 9.00 | 27.27 | 0.01 | 100.0 | SNORD115-5-201 | snoRNA | GM23338 (Cell line) |
| ENST00000363723.1 | ENST00000363723.1_2_82_+ | 2–82 | 5.00 | 26.32 | 0.01 | 100.0 | SNORD115-33-201 | snoRNA | GM23338 (Cell line) |
| ENST00000363742.1 | ENST00000363742.1_4_67_+ | 4–67 | 5.00 | 62.50 | 0.01 | 83.33 | SNORD114-25-201 | snoRNA | GM23338 (Cell line) |
| ENST00000363762.1 | ENST00000363762.1_3_72_+ | 3–72 | 8.00 | 100.00 | 0.01 | 100.0 | SNORD113-7-201 | snoRNA | GM23338 (Cell line) |
| ENST00000363872.1 | ENST00000363872.1_74_98_+ | 74–98 | 435.00 | 40.73 | 0.52 | 100.0 | Y_RNA.181-201 | misc RNA | GM23338 (Cell line) |
| ENST00000363887.1 | ENST00000363887.1_2_82_+ | 2–82 | 6.00 | 20.00 | 0.01 | 100.0 | SNORD115-16-201 | snoRNA | GM23338 (Cell line) |
| ENST00000364079.1 | ENST00000364079.1_2_82_+ | 2–82 | 21.00 | 63.64 | 0.03 | 100.0 | SNORD115-32-201 | snoRNA | GM23338 (Cell line) |
| ENST00000364117.1 | ENST00000364117.1_2_82_+ | 2–82 | 4.00 | 20.00 | 0.00 | 100.0 | SNORD115-30-201 | snoRNA | GM23338 (Cell line) |
| ENST00000364228.1 | ENST00000364228.1_1_30_+ | 1–30 | 498.22 | 4.29 | 0.60 | 36.8 | RNY1-201 | misc RNA | GM23338 (Cell line) |
| ENST00000364228.1 | ENST00000364228.1_1_63_+ | 1–63 | 580.00 | 4.99 | 0.70 | 100.0 | RNY1-201 | misc RNA | GM23338 (Cell line) |