ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 18.00 0.01 0.02 5.98 RNA5SP370-201 rRNA pseudogene GM23338 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 504.00 46.93 0.60 100.0 SNORA31-201 snoRNA GM23338 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 40.00 0.01 0.05 100.0 RNA5SP389-201 rRNA pseudogene GM23338 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 291.00 0.08 0.35 82.91 RNA5SP389-201 rRNA pseudogene GM23338 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 112.00 0.03 0.13 82.96 RNA5SP389-201 rRNA pseudogene GM23338 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 18.00 0.01 0.02 100.0 RNA5SP389-201 rRNA pseudogene GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 1926.00 4.90 2.31 82.52 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 2935.00 7.47 3.52 78.0 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 557.63 1.42 0.67 54.24 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 3171.00 8.07 3.81 74.58 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 845.00 2.15 1.01 62.22 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 375.00 0.95 0.45 100.0 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 2630.00 6.69 3.16 80.11 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 906.00 2.31 1.09 45.1 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1402.02 3.57 1.68 33.84 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 764.00 1.94 0.92 54.38 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 573.00 1.46 0.69 100.0 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 553.13 1.41 0.66 61.87 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 2179.00 5.54 2.61 100.0 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 2210.74 5.63 2.65 38.03 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1185.00 3.02 1.42 59.46 RNU5A-1-201 snRNA GM23338 (Cell line)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 2.00 40.00 0.00 100.0 SNORD114-14-201 snoRNA GM23338 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 39.00 3.42 0.05 100.0 SNORD104-201 snoRNA GM23338 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 28.00 2.45 0.03 100.0 SNORD104-201 snoRNA GM23338 (Cell line)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 11.00 28.21 0.01 100.0 SNORD115-9-201 snoRNA GM23338 (Cell line)