ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 423168.00 21.90 507.82 43.52 RPL23A-208 retained intron GM23338 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 1471905.00 76.19 1766.37 94.25 RPL23A-208 retained intron GM23338 (Cell line)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 1.00 1.08 0.00 100.0 MIR133A1HG-202 lncRNA GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4799.00 0.40 5.76 21.63 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 4762.00 0.39 5.71 10.21 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 5274.00 0.44 6.33 100.0 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 749789.00 61.96 899.79 99.58 RPL17-211 retained intron GM23338 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 413222.00 34.15 495.89 99.21 RPL17-211 retained intron GM23338 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 1.00 33.33 0.00 100.0 ENST00000582320 lncRNA GM23338 (Cell line)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 1.00 33.33 0.00 100.0 ENST00000582320 lncRNA GM23338 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 26171.00 15.58 31.41 100.0 RPL17-214 retained intron GM23338 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 25153.58 14.98 30.19 25.51 RPL17-214 retained intron GM23338 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 91911.62 54.72 110.30 70.69 RPL17-214 retained intron GM23338 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 47.00 0.00 0.06 100.0 SNORD43-201 snoRNA GM23338 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 1470328.00 99.04 1764.47 99.68 SNORD43-201 snoRNA GM23338 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 411.00 0.03 0.49 100.0 SNORD43-201 snoRNA GM23338 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 25.00 46.30 0.03 100.0 MIR151B-201 miRNA GM23338 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 828.00 1.78 0.99 100.0 SNORD3A-201 snoRNA GM23338 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 926.00 49.76 1.11 100.0 SNORD92-201 snoRNA GM23338 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2930.00 41.51 3.52 100.0 NSRP1-214 protein coding GM23338 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3118.00 44.17 3.74 84.48 NSRP1-214 protein coding GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 8.00 1.54 0.01 100.0 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 38.00 7.32 0.05 60.32 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 58.00 11.18 0.07 81.69 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 31.00 5.97 0.04 77.5 MIR23AHG-201 lncRNA GM23338 (Cell line)