ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 2526.00 1.26 3.03 100.0 RBMX-210 retained intron GM23338 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 994.00 0.50 1.19 100.0 RBMX-210 retained intron GM23338 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 185129.00 92.26 222.17 99.77 RBMX-210 retained intron GM23338 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 4916.00 55.31 5.90 100.0 RPL4-214 retained intron GM23338 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 236.00 2.66 0.28 100.0 RPL4-214 retained intron GM23338 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 19213.02 25.93 23.06 40.61 POLG-DT-202 lncRNA GM23338 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 31239.47 42.17 37.49 67.79 POLG-DT-202 lncRNA GM23338 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 290.00 0.39 0.35 100.0 POLG-DT-202 lncRNA GM23338 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 6.00 0.08 0.01 100.0 ENST00000570843 lncRNA GM23338 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2588.00 35.94 3.11 100.0 ENST00000570843 lncRNA GM23338 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 30.00 51.72 0.04 100.0 MIR497HG-207 lncRNA GM23338 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 5383.00 99.34 6.46 99.83 MIR22HG-212 lncRNA GM23338 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 12057.00 54.03 14.47 55.51 SNORD53B-201 snoRNA GM23338 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 24.00 0.11 0.03 9.76 SNORD53B-201 snoRNA GM23338 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 222.00 0.99 0.27 90.24 SNORD53B-201 snoRNA GM23338 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 237.00 56.16 0.28 100.0 ENST00000578036 lncRNA GM23338 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 10496.00 90.60 12.60 100.0 RPL23A-207 protein coding GM23338 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 488.00 94.57 0.59 100.0 MIR744-201 miRNA GM23338 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 54.00 78.26 0.06 100.0 MIR378C-201 miRNA GM23338 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 3.00 4.48 0.00 7.69 MIR142HG-201 lncRNA GM23338 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 2.00 2.99 0.00 100.0 MIR142HG-201 lncRNA GM23338 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 2.00 2.99 0.00 4.65 MIR142HG-201 lncRNA GM23338 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 2849.00 6.52 3.42 100.0 SNORD3C-201 snoRNA GM23338 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 12537.02 0.65 15.05 68.83 RPL23A-208 retained intron GM23338 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 5283.99 0.27 6.34 42.52 RPL23A-208 retained intron GM23338 (Cell line)