ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 160.00 15.67 0.19 98.16 RPL3-212 retained intron GM23338 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2273.00 94.63 2.73 100.0 SMC1A-204 retained intron GM23338 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 23142.00 82.46 27.77 99.14 RABGGTB-208 protein coding CDS not defined GM23338 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 41.00 3.90 0.05 100.0 DDX39B-219 retained intron GM23338 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 228.00 21.69 0.27 85.71 DDX39B-219 retained intron GM23338 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 47.00 4.47 0.06 100.0 DDX39B-219 retained intron GM23338 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 5438.00 77.59 6.53 100.0 RPS8-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 64958.00 95.31 77.95 99.94 RPL13-207 retained intron GM23338 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 733.00 1.08 0.88 100.0 RPL13-207 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 569.00 0.06 0.68 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 11545.00 1.27 13.85 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 3047.00 0.34 3.66 73.46 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3390.00 0.37 4.07 82.56 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 450547.00 49.63 540.68 87.28 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 2434.00 0.27 2.92 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 374611.00 41.26 449.55 96.47 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2692.00 0.30 3.23 45.47 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1770.00 0.19 2.12 58.59 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 636.00 0.07 0.76 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 18.00 0.00 0.02 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 7362.00 0.81 8.83 78.37 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 2354.00 0.26 2.82 74.9 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2676.00 0.29 3.21 54.27 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 2188.00 0.24 2.63 56.98 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 30796.00 95.73 36.96 100.0 RPS8-207 protein coding CDS not defined GM23338 (Cell line)