ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 19.00 15.70 0.05 100.0 HCN2-201 protein coding urinary bladder (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3561.00 93.32 9.60 100.0 SLC49A4-201 protein coding urinary bladder (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 238.00 6.92 0.64 100.0 ATP5MC3-201 protein coding urinary bladder (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 35.00 8.95 0.09 100.0 CDC25A-201 protein coding urinary bladder (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 7.00 5.43 0.02 100.0 RUNX3-201 protein coding urinary bladder (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 373.00 70.24 1.01 100.0 BLOC1S4-201 protein coding urinary bladder (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 1390.00 19.67 3.75 100.0 ATAD5-201 protein coding urinary bladder (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 164.00 8.70 0.44 100.0 SLITRK5-201 protein coding urinary bladder (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 19.00 38.00 0.05 100.0 HASPIN-201 protein coding urinary bladder (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 1047.00 88.06 2.82 100.0 PRR14L-201 protein coding urinary bladder (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 2234.00 91.78 6.02 100.0 ATG101-201 protein coding urinary bladder (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 3188.00 82.00 8.59 100.0 PRICKLE1-201 protein coding urinary bladder (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 72359.00 96.52 195.00 98.34 MIR133A2-201 miRNA urinary bladder (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 6.00 25.00 0.02 100.0 PBLD-204 protein coding urinary bladder (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 443683.00 89.59 1195.71 98.81 MIRLET7BHG-201 lncRNA urinary bladder (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 28466.00 5.75 76.71 91.09 MIRLET7BHG-201 lncRNA urinary bladder (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 1003.00 96.44 2.70 98.53 MIR375-201 miRNA urinary bladder (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 23.00 2.21 0.06 48.94 MIR375-201 miRNA urinary bladder (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 9588.00 71.92 25.84 100.0 MIR30E-201 miRNA urinary bladder (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2360.00 17.70 6.36 100.0 MIR30E-201 miRNA urinary bladder (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 296.00 48.52 0.80 100.0 MIR29A-201 miRNA urinary bladder (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 938.00 83.75 2.53 100.0 MIR345-201 miRNA urinary bladder (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 139169.00 98.67 375.05 100.0 MIR16-2-201 miRNA urinary bladder (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 355.00 2.84 0.96 100.0 MIR340-201 miRNA urinary bladder (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 11596.00 92.76 31.25 100.0 MIR340-201 miRNA urinary bladder (Tissue)