ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 1994.00 6.13 5.37 100.0 7SK.1-201 misc RNA urinary bladder (Tissue)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 822.00 2.53 2.22 100.0 7SK.1-201 misc RNA urinary bladder (Tissue)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 1026.00 50.10 2.77 100.0 SNORD14C-201 snoRNA urinary bladder (Tissue)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 463.00 50.27 1.25 100.0 SNORD115-44-201 snoRNA urinary bladder (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 63.00 7.85 0.17 100.0 RNA5SP77-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 45635.00 31.98 122.98 100.0 SNORD114-22-201 snoRNA urinary bladder (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 92368.00 64.73 248.93 99.03 SNORD114-22-201 snoRNA urinary bladder (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1351.00 4.64 3.64 100.0 SNORD6-201 snoRNA urinary bladder (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 25552.00 87.81 68.86 100.0 SNORD6-201 snoRNA urinary bladder (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 1630.00 14.78 4.39 100.0 RNY3-201 misc RNA urinary bladder (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 56165.00 64.83 151.36 97.87 SNORD82-201 snoRNA urinary bladder (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 284.00 0.33 0.77 100.0 SNORD82-201 snoRNA urinary bladder (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 5583.00 6.44 15.05 90.68 SNORD82-201 snoRNA urinary bladder (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 7416.84 8.56 19.99 47.18 SNORD82-201 snoRNA urinary bladder (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 7986.69 9.22 21.52 50.8 SNORD82-201 snoRNA urinary bladder (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 497.00 0.57 1.34 100.0 SNORD82-201 snoRNA urinary bladder (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 935.00 1.08 2.52 100.0 SNORD82-201 snoRNA urinary bladder (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 12859.00 93.99 34.65 96.57 MIR146B-201 miRNA urinary bladder (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 289.00 55.90 0.78 100.0 SNHG20-201 lncRNA urinary bladder (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 411.00 22.36 1.11 100.0 ATP5MK-205 protein coding urinary bladder (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 287.00 15.61 0.77 100.0 ATP5MK-205 protein coding urinary bladder (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 44.00 25.43 0.12 100.0 LINC01556-201 lncRNA urinary bladder (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 9.00 4.50 0.02 100.0 ATAD3A-202 protein coding urinary bladder (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 7548.00 65.50 20.34 78.84 TMC5-202 protein coding urinary bladder (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 33.00 53.23 0.09 100.0 ZMYM2-203 protein coding urinary bladder (Tissue)