ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 344.00 39.91 0.93 100.0 SNORD115-16-201 snoRNA urinary bladder (Tissue)
ENST00000364079.1 ENST00000364079.1_2_82_+ 2–82 297.00 54.50 0.80 100.0 SNORD115-32-201 snoRNA urinary bladder (Tissue)
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 215.00 43.52 0.58 100.0 SNORD115-30-201 snoRNA urinary bladder (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 597.28 4.84 1.61 31.12 RNY1-201 misc RNA urinary bladder (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 260.00 2.11 0.70 100.0 RNY1-201 misc RNA urinary bladder (Tissue)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 1838.00 14.89 4.95 100.0 RNY1-201 misc RNA urinary bladder (Tissue)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 645.00 5.23 1.74 100.0 RNY1-201 misc RNA urinary bladder (Tissue)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 1856.24 15.04 5.00 70.61 RNY1-201 misc RNA urinary bladder (Tissue)
ENST00000364273.1 ENST00000364273.1_2_82_+ 2–82 263.00 32.35 0.71 100.0 SNORD115-42-201 snoRNA urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 838.14 6.20 2.26 44.09 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 7.00 0.05 0.02 100.0 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 364.00 2.69 0.98 100.0 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 379.00 2.80 1.02 100.0 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 26.00 0.19 0.07 100.0 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 161.56 1.19 0.44 12.75 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 116.00 0.86 0.31 100.0 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 949.52 7.02 2.56 74.82 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 41.00 0.30 0.11 100.0 RNA5SP202-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 20747.00 48.55 55.91 100.0 SNORD114-9-201 snoRNA urinary bladder (Tissue)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 17185.00 40.21 46.31 100.0 SNORD114-9-201 snoRNA urinary bladder (Tissue)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 708.00 2.13 1.91 100.0 Y_RNA.234-201 misc RNA urinary bladder (Tissue)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 41.00 0.37 0.11 100.0 RNA5S9-201 rRNA urinary bladder (Tissue)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 136.00 58.87 0.37 100.0 SNORD115-23-201 snoRNA urinary bladder (Tissue)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 78.00 3.45 0.21 100.0 RNA5SP141-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 916.00 47.41 2.47 100.0 SNORD114-15-201 snoRNA urinary bladder (Tissue)