ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 5255.00 70.24 14.16 100.0 RPS8-206 protein coding CDS not defined urinary bladder (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2107.00 0.58 5.68 100.0 RPL13-207 retained intron urinary bladder (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 356089.00 97.28 959.65 99.61 RPL13-207 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 1203.00 0.23 3.24 100.0 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 9233.00 1.80 24.88 73.68 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 5712.00 1.11 15.39 87.01 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2133.00 0.42 5.75 86.46 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1073.00 0.21 2.89 54.47 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 39.00 0.01 0.11 44.83 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2165.00 0.42 5.83 43.08 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 43266.00 8.42 116.60 61.89 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 307.00 0.06 0.83 100.0 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 427743.00 83.29 1152.75 98.73 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2282.00 0.44 6.15 100.0 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 675.00 0.13 1.82 45.12 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 34.00 0.01 0.09 100.0 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 209.00 0.04 0.56 100.0 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 588.00 0.11 1.58 40.38 EIF4A2-219 retained intron urinary bladder (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 54872.00 96.52 147.88 100.0 RPS8-207 protein coding CDS not defined urinary bladder (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 603.00 36.55 1.63 100.0 RPL7A-206 protein coding CDS not defined urinary bladder (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 240.00 14.55 0.65 100.0 RPL7A-206 protein coding CDS not defined urinary bladder (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 119.00 7.21 0.32 100.0 RPL7A-206 protein coding CDS not defined urinary bladder (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2446.00 0.34 6.59 100.0 RPL21-209 retained intron urinary bladder (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 826.00 0.12 2.23 100.0 RPL21-209 retained intron urinary bladder (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 62161.00 8.75 167.52 98.44 RPL21-209 retained intron urinary bladder (Tissue)