ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1244.00 63.93 3.35 100.0 SNORD111B-201 snoRNA urinary bladder (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 820.00 27.83 2.21 100.0 RNU2-36P-201 snRNA urinary bladder (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 69.00 2.34 0.19 100.0 RNU2-36P-201 snRNA urinary bladder (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 700.00 0.64 1.89 100.0 SNORD19C-201 snoRNA urinary bladder (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 104674.00 96.21 282.09 99.19 SNORD19C-201 snoRNA urinary bladder (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 119197.00 94.32 321.23 98.46 SNORD12B-201 snoRNA urinary bladder (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1303.00 1.03 3.51 100.0 SNORD12B-201 snoRNA urinary bladder (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 172.00 0.14 0.46 100.0 SNORD12B-201 snoRNA urinary bladder (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 2314.00 33.70 6.24 100.0 Y_RNA.609-201 misc RNA urinary bladder (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 731.00 41.37 1.97 100.0 Y_RNA.612-201 misc RNA urinary bladder (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 670.00 0.41 1.81 100.0 SNORD71-201 snoRNA urinary bladder (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 154710.00 95.16 416.94 99.04 SNORD71-201 snoRNA urinary bladder (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 3011.00 1.85 8.11 100.0 SNORD71-201 snoRNA urinary bladder (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 1088.00 14.00 2.93 56.43 MIR194-2HG-201 lncRNA urinary bladder (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 6060.00 77.98 16.33 91.44 MIR194-2HG-201 lncRNA urinary bladder (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 18.00 0.36 0.05 100.0 LINC01783-201 lncRNA urinary bladder (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 52.00 78.79 0.14 100.0 RPS7P15-201 processed pseudogene urinary bladder (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 111.00 1.19 0.30 100.0 SNORD62B-201 snoRNA urinary bladder (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 3188.00 34.16 8.59 100.0 SNORD62B-201 snoRNA urinary bladder (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1206.00 12.92 3.25 90.54 SNORD62B-201 snoRNA urinary bladder (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 739.00 7.92 1.99 100.0 SNORD62B-201 snoRNA urinary bladder (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 827.00 8.86 2.23 100.0 SNORD62B-201 snoRNA urinary bladder (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 33.00 84.62 0.09 100.0 MRPL32-203 nonsense mediated decay urinary bladder (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 635.00 95.63 1.71 100.0 ENST00000436739 lncRNA urinary bladder (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 383.00 3.75 1.03 87.05 TMEM107-204 protein coding urinary bladder (Tissue)