ENCFF001RMV

Library Details

Organism: Homo Sapiens
Biosample: tongue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGF
Description: Part of ENCODE experiment ENCSR000AGF. The libraries contained in this experiment come from human fetal tongue tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 13359.00 68.58 26.04 100.0 RPS8-206 protein coding CDS not defined tongue (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2918.00 3.64 5.69 100.0 RPL13-207 retained intron tongue (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 72092.00 89.82 140.51 99.14 RPL13-207 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 46.00 0.01 0.09 100.0 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 11607.00 1.33 22.62 75.18 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 5891.00 0.68 11.48 85.61 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3388.00 0.39 6.60 76.12 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 2005.00 0.23 3.91 49.6 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 112.00 0.01 0.22 67.07 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2973.00 0.34 5.79 50.24 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 79820.00 9.16 155.58 69.68 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 495.00 0.06 0.96 100.0 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 732063.00 83.99 1426.85 99.19 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2687.00 0.31 5.24 100.0 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 899.00 0.10 1.75 50.65 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 2.00 0.00 0.00 100.0 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 208.00 0.02 0.41 100.0 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1347.00 0.15 2.63 29.07 EIF4A2-219 retained intron tongue (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 32213.00 93.74 62.79 100.0 RPS8-207 protein coding CDS not defined tongue (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 565.00 20.88 1.10 100.0 RPL7A-206 protein coding CDS not defined tongue (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 619.00 22.88 1.21 100.0 RPL7A-206 protein coding CDS not defined tongue (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 264.00 9.76 0.51 100.0 RPL7A-206 protein coding CDS not defined tongue (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4169.00 0.20 8.13 100.0 RPL21-209 retained intron tongue (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 2759.00 0.14 5.38 100.0 RPL21-209 retained intron tongue (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 195067.00 9.56 380.20 99.28 RPL21-209 retained intron tongue (Tissue)