ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 4957.00 1.44 10.40 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 79.00 0.02 0.17 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 2806.00 0.81 5.88 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 2636.00 0.77 5.53 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 6204.00 2.02 13.01 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 2077.00 0.68 4.36 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 154.00 0.05 0.32 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3788.00 1.24 7.94 69.99 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 289400.00 94.43 606.94 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 69529.00 92.79 145.82 97.88 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 848.00 1.13 1.78 100.0 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 216.00 0.29 0.45 100.0 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 271.00 0.36 0.57 100.0 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 104.00 60.82 0.22 100.0 B4GALT1-203 nonsense mediated decay metanephros (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 1338.00 6.27 2.81 100.0 ENST00000722183 lncRNA metanephros (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 10791.00 50.56 22.63 86.6 ENST00000722183 lncRNA metanephros (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1713.00 8.03 3.59 100.0 ENST00000722183 lncRNA metanephros (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 10.00 66.67 0.02 100.0 MIR34BHG-202 lncRNA metanephros (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 7982.00 78.64 16.74 84.04 THBS3-AS1-228 lncRNA metanephros (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 2418.00 54.35 5.07 100.0 MIR200CHG-202 lncRNA metanephros (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 1275.00 28.66 2.67 100.0 MIR200CHG-202 lncRNA metanephros (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 753.00 13.08 1.58 100.0 SNHG16-266 lncRNA metanephros (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1707.00 29.64 3.58 100.0 SNHG16-266 lncRNA metanephros (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 745.00 12.94 1.56 100.0 SNHG16-266 lncRNA metanephros (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 254.00 4.41 0.53 100.0 SNHG16-266 lncRNA metanephros (Tissue)