ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 18364.44 53.45 38.51 58.39 RPL17-214 retained intron metanephros (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 104.00 0.02 0.22 100.0 SNORD43-201 snoRNA metanephros (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 435272.00 99.27 912.86 99.98 SNORD43-201 snoRNA metanephros (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 130.00 0.03 0.27 100.0 SNORD43-201 snoRNA metanephros (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 591.00 61.43 1.24 100.0 MIR151B-201 miRNA metanephros (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 914.00 7.96 1.92 100.0 SNORD3A-201 snoRNA metanephros (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 11005.00 83.30 23.08 100.0 SNORD92-201 snoRNA metanephros (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 7505.00 73.54 15.74 100.0 NSRP1-214 protein coding metanephros (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1511.00 14.81 3.17 80.5 NSRP1-214 protein coding metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 228.00 0.80 0.48 100.0 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 9026.00 31.77 18.93 94.99 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 4931.00 17.36 10.34 92.34 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 6207.00 21.85 13.02 82.59 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 5373.00 18.91 11.27 82.12 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 36.00 52.17 0.08 100.0 MIR122HG-201 lncRNA metanephros (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 27.00 50.00 0.06 100.0 ODAD3-204 nonsense mediated decay metanephros (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 228.00 0.77 0.48 100.0 VMP1-217 retained intron metanephros (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 4.00 0.01 0.01 100.0 VMP1-217 retained intron metanephros (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 15512.00 52.20 32.53 56.2 VMP1-217 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 435.00 0.07 0.91 100.0 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 502821.58 83.05 1054.53 90.3 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 93849.86 15.50 196.82 16.08 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 9289.00 1.53 19.48 89.57 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 57.00 0.01 0.12 100.0 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 4.00 0.00 0.01 100.0 C19orf48P-203 retained intron metanephros (Tissue)