ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 3.00 0.00 0.01 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 18796.00 10.01 39.42 73.3 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 365.00 0.19 0.77 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1022.00 0.54 2.14 57.22 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 160.00 0.09 0.34 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1750.00 0.93 3.67 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 2559.00 49.01 5.37 85.02 RPL7A-207 protein coding CDS not defined metanephros (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 86.00 1.65 0.18 100.0 RPL7A-207 protein coding CDS not defined metanephros (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 564.00 10.80 1.18 100.0 RPL7A-207 protein coding CDS not defined metanephros (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 570.00 3.22 1.20 100.0 RN7SL2-201 misc RNA metanephros (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 770.00 4.35 1.61 50.93 RN7SL2-201 misc RNA metanephros (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 16466.00 58.88 34.53 75.17 NOP56-217 protein coding CDS not defined metanephros (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 2936.00 10.50 6.16 74.96 NOP56-217 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 54686.00 58.17 114.69 92.02 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 26358.00 28.04 55.28 95.89 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 144.00 0.15 0.30 100.0 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 280.00 0.30 0.59 39.05 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 609.00 0.65 1.28 100.0 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 629.00 0.67 1.32 100.0 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 437.00 0.46 0.92 60.95 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 2967.00 15.21 6.22 100.0 GNL3-211 retained intron metanephros (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 14853.00 76.15 31.15 100.0 GNL3-211 retained intron metanephros (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 593.00 6.46 1.24 100.0 RPL5-205 retained intron metanephros (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 7045.00 76.80 14.77 100.0 RPL5-205 retained intron metanephros (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 7.00 1.88 0.01 100.0 ZBED9-AS1-201 lncRNA metanephros (Tissue)