ENCFF001RMT

Library Details

Organism: Homo Sapiens
Biosample: thyroid gland (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGE
Description: Part of ENCODE experiment ENCSR000AGE. The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 2687.00 8.64 3.54 100.0 TMEM107-204 protein coding thyroid gland (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 6255.00 64.55 8.25 91.17 SNHG16-201 lncRNA thyroid gland (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1963.00 20.26 2.59 100.0 SNHG16-201 lncRNA thyroid gland (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 107.00 11.78 0.14 100.0 SNHG14-207 lncRNA thyroid gland (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 166532.00 86.02 219.67 97.35 SNORD105B-201 snoRNA thyroid gland (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 8805.00 43.45 11.61 59.88 SNORD121B-201 snoRNA thyroid gland (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 261.00 0.11 0.34 100.0 SNORD127-201 snoRNA thyroid gland (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 229177.00 95.42 302.30 99.14 SNORD127-201 snoRNA thyroid gland (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 205447.00 95.03 271.00 100.0 SNORD42B-201 snoRNA thyroid gland (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 255.00 1.53 0.34 100.0 RNY4P25-201 misc RNA thyroid gland (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 5390.00 74.59 7.11 100.0 SNORD121A-201 snoRNA thyroid gland (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 22457.00 73.47 29.62 90.67 SNORD126-201 snoRNA thyroid gland (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 6243.00 20.42 8.23 71.13 SNORD126-201 snoRNA thyroid gland (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 54103.00 93.19 71.37 97.15 SNORD124-201 snoRNA thyroid gland (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 36.00 1.15 0.05 100.0 SNHG12-201 retained intron thyroid gland (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 20900.00 34.11 27.57 100.0 RPL3-212 retained intron thyroid gland (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 22742.00 37.12 30.00 94.58 RPL3-212 retained intron thyroid gland (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 72429.00 96.71 95.54 100.0 SMC1A-204 retained intron thyroid gland (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 56533.00 80.17 74.57 96.79 RABGGTB-208 protein coding CDS not defined thyroid gland (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 18124.00 36.52 23.91 75.43 DDX39B-219 retained intron thyroid gland (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 2905.00 5.85 3.83 100.0 DDX39B-219 retained intron thyroid gland (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 8415.00 16.95 11.10 100.0 DDX39B-219 retained intron thyroid gland (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 11496.00 68.78 15.16 100.0 RPS8-206 protein coding CDS not defined thyroid gland (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 365708.00 93.50 482.39 99.42 RPL13-207 retained intron thyroid gland (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 10633.00 2.72 14.03 100.0 RPL13-207 retained intron thyroid gland (Tissue)