ENCFF001RMO

Library Details

Organism: Homo Sapiens
Biosample: cerebellum (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFQ
Description: Part of ENCODE experiment ENCSR000AFQ. The libraries contained in this experiment come from human fetal cerebellum tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 271.00 3.48 0.52 54.42 TMEM107-204 protein coding cerebellum (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 565.00 7.26 1.09 100.0 TMEM107-204 protein coding cerebellum (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1103.00 14.18 2.13 64.73 TMEM107-204 protein coding cerebellum (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 453.00 5.82 0.87 100.0 TMEM107-204 protein coding cerebellum (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 6030.00 63.71 11.64 90.98 SNHG16-201 lncRNA cerebellum (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 2051.00 21.67 3.96 100.0 SNHG16-201 lncRNA cerebellum (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 3991.00 15.16 7.71 100.0 SNHG14-207 lncRNA cerebellum (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 231530.00 92.33 447.02 97.36 SNORD105B-201 snoRNA cerebellum (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3521.00 49.93 6.80 68.33 SNORD121B-201 snoRNA cerebellum (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 106.00 0.09 0.20 100.0 SNORD127-201 snoRNA cerebellum (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 109144.00 95.82 210.73 99.3 SNORD127-201 snoRNA cerebellum (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 30405.00 91.11 58.70 100.0 SNORD42B-201 snoRNA cerebellum (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 931.00 3.18 1.80 100.0 RNY4P25-201 misc RNA cerebellum (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1097.00 63.56 2.12 100.0 SNORD121A-201 snoRNA cerebellum (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 10652.00 79.84 20.57 92.78 SNORD126-201 snoRNA cerebellum (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2140.00 16.04 4.13 56.66 SNORD126-201 snoRNA cerebellum (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 31125.00 92.89 60.09 96.45 SNORD124-201 snoRNA cerebellum (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 24.00 1.91 0.05 100.0 SNHG12-201 retained intron cerebellum (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3493.00 31.52 6.74 100.0 RPL3-212 retained intron cerebellum (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 4274.00 38.57 8.25 93.81 RPL3-212 retained intron cerebellum (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 66168.00 96.76 127.75 100.0 SMC1A-204 retained intron cerebellum (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 41758.00 88.03 80.62 98.56 RABGGTB-208 protein coding CDS not defined cerebellum (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 13222.00 44.71 25.53 81.0 DDX39B-219 retained intron cerebellum (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 2013.00 6.81 3.89 100.0 DDX39B-219 retained intron cerebellum (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 4664.00 15.77 9.00 100.0 DDX39B-219 retained intron cerebellum (Tissue)