ENCFF001RMM

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 949.00 16.73 1.56 100.0 ENST00000582320 lncRNA frontal cortex (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 567.00 9.99 0.93 100.0 ENST00000582320 lncRNA frontal cortex (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 5597.00 8.05 9.22 100.0 RPL17-214 retained intron frontal cortex (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 25259.80 36.31 41.63 47.98 RPL17-214 retained intron frontal cortex (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 31757.90 45.65 52.34 53.09 RPL17-214 retained intron frontal cortex (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 375.00 0.06 0.62 100.0 SNORD43-201 snoRNA frontal cortex (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 603999.00 99.11 995.39 99.98 SNORD43-201 snoRNA frontal cortex (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 538.00 0.09 0.89 100.0 SNORD43-201 snoRNA frontal cortex (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 787.00 46.99 1.30 100.0 MIR151B-201 miRNA frontal cortex (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 208.00 1.62 0.34 100.0 SNORD3A-201 snoRNA frontal cortex (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 58743.00 92.65 96.81 100.0 SNORD92-201 snoRNA frontal cortex (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5054.00 28.02 8.33 83.43 NSRP1-214 protein coding frontal cortex (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 10894.00 60.39 17.95 100.0 NSRP1-214 protein coding frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 24.00 0.69 0.04 100.0 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 701.00 20.03 1.16 91.28 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 660.00 18.86 1.09 82.09 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1170.00 33.43 1.93 92.27 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 295.00 8.43 0.49 50.34 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 1.00 7.14 0.00 100.0 MIR122HG-201 lncRNA frontal cortex (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 25.00 38.46 0.04 100.0 ODAD3-204 nonsense mediated decay frontal cortex (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 85.00 0.42 0.14 100.0 VMP1-217 retained intron frontal cortex (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 8.00 0.04 0.01 100.0 VMP1-217 retained intron frontal cortex (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 11540.00 57.66 19.02 61.14 VMP1-217 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 367.00 0.06 0.60 100.0 C19orf48P-203 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 501413.32 75.92 826.33 82.07 C19orf48P-203 retained intron frontal cortex (Tissue)