ENCFF001RMM

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 58.00 0.66 0.10 53.7 TMEM107-204 protein coding frontal cortex (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 903.00 10.35 1.49 51.42 TMEM107-204 protein coding frontal cortex (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 4355.00 69.30 7.18 92.36 SNHG16-201 lncRNA frontal cortex (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1049.00 16.69 1.73 100.0 SNHG16-201 lncRNA frontal cortex (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 9647.00 16.15 15.90 100.0 SNHG14-207 lncRNA frontal cortex (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 287304.00 93.03 473.48 97.18 SNORD105B-201 snoRNA frontal cortex (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 4918.00 45.42 8.10 59.15 SNORD121B-201 snoRNA frontal cortex (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 29.00 0.02 0.05 100.0 SNORD127-201 snoRNA frontal cortex (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 149756.00 96.25 246.80 99.31 SNORD127-201 snoRNA frontal cortex (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 19291.00 92.02 31.79 100.0 SNORD42B-201 snoRNA frontal cortex (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 161.00 0.79 0.27 100.0 RNY4P25-201 misc RNA frontal cortex (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1748.00 68.98 2.88 100.0 SNORD121A-201 snoRNA frontal cortex (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 7212.00 80.02 11.89 92.6 SNORD126-201 snoRNA frontal cortex (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1542.00 17.11 2.54 64.09 SNORD126-201 snoRNA frontal cortex (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 41178.00 93.91 67.86 96.5 SNORD124-201 snoRNA frontal cortex (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 28.00 3.75 0.05 100.0 SNHG12-201 retained intron frontal cortex (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 5021.00 34.93 8.27 100.0 RPL3-212 retained intron frontal cortex (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 4818.00 33.52 7.94 93.19 RPL3-212 retained intron frontal cortex (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 37029.00 96.61 61.02 100.0 SMC1A-204 retained intron frontal cortex (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 39314.00 89.47 64.79 98.69 RABGGTB-208 protein coding CDS not defined frontal cortex (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 18156.00 54.78 29.92 80.89 DDX39B-219 retained intron frontal cortex (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 1465.00 4.42 2.41 100.0 DDX39B-219 retained intron frontal cortex (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 2921.00 8.81 4.81 100.0 DDX39B-219 retained intron frontal cortex (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 8547.00 79.35 14.09 100.0 RPS8-206 protein coding CDS not defined frontal cortex (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3581.00 1.66 5.90 100.0 RPL13-207 retained intron frontal cortex (Tissue)