ENCFF001RMI

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 652.00 17.37 2.83 100.0 GABRE-209 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 124.00 0.07 0.54 64.92 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 530.00 0.31 2.30 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 142548.00 84.72 618.22 97.97 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 4410.00 2.62 19.13 80.5 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 93.00 0.06 0.40 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 7.00 0.00 0.03 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 3.00 0.00 0.01 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 1104.00 0.66 4.79 100.0 RPL13A-212 retained intron skeletal muscle tissue (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 371.00 11.01 1.61 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 1144.00 33.94 4.96 68.22 RPL7A-207 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 30.00 0.89 0.13 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 188.00 2.86 0.82 21.66 RN7SL2-201 misc RNA skeletal muscle tissue (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 236.00 3.60 1.02 100.0 RN7SL2-201 misc RNA skeletal muscle tissue (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1598.00 4.77 6.93 85.36 NOP56-217 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 24032.00 71.79 104.22 80.68 NOP56-217 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 517.00 0.70 2.24 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 923.00 1.24 4.00 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 355.00 0.48 1.54 55.64 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 37521.00 50.57 162.72 90.5 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 24638.00 33.21 106.85 94.26 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 407.00 0.55 1.77 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 283.00 0.38 1.23 44.36 RABGGTB-213 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1974.00 12.68 8.56 100.0 GNL3-211 retained intron skeletal muscle tissue (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 11991.00 77.04 52.00 100.0 GNL3-211 retained intron skeletal muscle tissue (Tissue)