ENCFF001RMH

Library Details

Organism: Homo Sapiens
Biosample: lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFW
Description: Part of ENCODE experiment ENCSR000AFW. The libraries contained in this experiment come from human fetal lung tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1025.00 0.52 2.32 72.95 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 140277.00 70.67 318.12 98.39 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 264.00 0.13 0.60 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 4.00 0.00 0.01 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 26391.00 13.29 59.85 68.35 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 236.00 0.12 0.54 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 976.00 0.49 2.21 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 59.00 0.03 0.13 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 158.00 2.54 0.36 100.0 RPL7A-207 protein coding CDS not defined lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 642.00 10.31 1.46 100.0 RPL7A-207 protein coding CDS not defined lung (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 2681.00 43.08 6.08 82.75 RPL7A-207 protein coding CDS not defined lung (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 759.00 3.56 1.72 55.73 RN7SL2-201 misc RNA lung (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1053.00 4.95 2.39 100.0 RN7SL2-201 misc RNA lung (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 8129.00 14.36 18.43 87.41 NOP56-217 protein coding CDS not defined lung (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 34271.00 60.55 77.72 78.31 NOP56-217 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 762.00 0.73 1.73 100.0 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 450.00 0.43 1.02 50.96 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 49950.00 47.81 113.28 92.05 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 801.00 0.77 1.82 100.0 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 39376.00 37.69 89.30 95.58 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 205.00 0.20 0.46 100.0 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 433.00 0.41 0.98 49.04 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 4020.00 16.86 9.12 100.0 GNL3-211 retained intron lung (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 17004.00 71.32 38.56 100.0 GNL3-211 retained intron lung (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 4944.00 70.67 11.21 100.0 RPL5-205 retained intron lung (Tissue)