ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 6.00 8.57 0.01 100.0 HCN2-201 protein coding metanephros (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1715.00 94.39 3.19 100.0 SLC49A4-201 protein coding metanephros (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 8.00 2.42 0.01 100.0 ATP5MC3-201 protein coding metanephros (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 60.00 83.33 0.11 100.0 CDC25A-201 protein coding metanephros (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 36.00 61.02 0.07 100.0 BLOC1S4-201 protein coding metanephros (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 148.00 10.47 0.28 100.0 ATAD5-201 protein coding metanephros (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 227.00 23.89 0.42 100.0 SLITRK5-201 protein coding metanephros (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 52.00 62.65 0.10 100.0 HASPIN-201 protein coding metanephros (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 387.00 73.43 0.72 100.0 PRR14L-201 protein coding metanephros (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 1090.00 97.58 2.03 100.0 ATG101-201 protein coding metanephros (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 2310.00 89.40 4.30 100.0 PRICKLE1-201 protein coding metanephros (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 448.00 96.97 0.83 99.56 MIR133A2-201 miRNA metanephros (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 164866.00 88.99 306.73 98.83 MIRLET7BHG-201 lncRNA metanephros (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 13078.00 7.06 24.33 88.21 MIRLET7BHG-201 lncRNA metanephros (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 64.00 98.46 0.12 98.46 MIR375-201 miRNA metanephros (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 16442.00 88.20 30.59 100.0 MIR30E-201 miRNA metanephros (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1148.00 6.16 2.14 100.0 MIR30E-201 miRNA metanephros (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 59.00 38.31 0.11 100.0 MIR29A-201 miRNA metanephros (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 1237.00 86.56 2.30 100.0 MIR345-201 miRNA metanephros (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 51373.00 98.78 95.58 100.0 MIR16-2-201 miRNA metanephros (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 126.00 5.11 0.23 100.0 MIR340-201 miRNA metanephros (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 2227.00 90.31 4.14 100.0 MIR340-201 miRNA metanephros (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 6113.00 88.20 11.37 100.0 MIR107-201 miRNA metanephros (Tissue)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 952.00 77.97 1.77 81.79 MIR381-201 miRNA metanephros (Tissue)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 30683.00 92.18 57.08 95.69 MIR103A2-201 miRNA metanephros (Tissue)