ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 93.00 31.21 0.17 100.0 RNA5SP77-201 rRNA pseudogene metanephros (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 11279.00 47.68 20.98 100.0 SNORD114-22-201 snoRNA metanephros (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 11451.00 48.41 21.30 97.32 SNORD114-22-201 snoRNA metanephros (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 2052.00 4.11 3.82 100.0 SNORD6-201 snoRNA metanephros (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 43780.00 87.78 81.45 100.0 SNORD6-201 snoRNA metanephros (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 702.00 8.15 1.31 100.0 RNY3-201 misc RNA metanephros (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 18902.54 18.46 35.17 51.39 SNORD82-201 snoRNA metanephros (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 1831.00 1.79 3.41 100.0 SNORD82-201 snoRNA metanephros (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 480.00 0.47 0.89 100.0 SNORD82-201 snoRNA metanephros (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 12671.00 12.37 23.57 89.24 SNORD82-201 snoRNA metanephros (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1046.00 1.02 1.95 100.0 SNORD82-201 snoRNA metanephros (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 38894.00 37.98 72.36 98.42 SNORD82-201 snoRNA metanephros (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 17560.85 17.15 32.67 47.74 SNORD82-201 snoRNA metanephros (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 61896.00 93.54 115.16 95.47 MIR146B-201 miRNA metanephros (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 11.00 5.39 0.02 100.0 SNHG20-201 lncRNA metanephros (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 272.00 25.30 0.51 100.0 ATP5MK-205 protein coding metanephros (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 232.00 21.58 0.43 100.0 ATP5MK-205 protein coding metanephros (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 6.00 15.00 0.01 100.0 LINC01556-201 lncRNA metanephros (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 15.00 25.42 0.03 100.0 ATAD3A-202 protein coding metanephros (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 1024.00 43.95 1.91 74.85 TMC5-202 protein coding metanephros (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 61.00 62.24 0.11 100.0 ZMYM2-203 protein coding metanephros (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 1502.00 13.06 2.79 100.0 RNVU1-7-201 snRNA metanephros (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 8690.00 68.97 16.17 100.0 SNORD24-201 snoRNA metanephros (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 345.00 74.68 0.64 100.0 Y_RNA.389-201 misc RNA metanephros (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 310.00 0.30 0.58 100.0 SNORD101-201 snoRNA metanephros (Tissue)