ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 2958.00 81.38 5.50 85.96 MIR3142HG-201 lncRNA metanephros (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 5778.00 83.45 10.75 100.0 SNHG6-204 retained intron metanephros (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 36947.00 43.31 68.74 86.29 MIR151A-201 miRNA metanephros (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 40537.00 47.51 75.42 100.0 MIR151A-201 miRNA metanephros (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1540.00 89.95 2.87 100.0 DENND3-221 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 155.00 0.07 0.29 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 70.00 0.03 0.13 69.31 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 19.00 0.01 0.04 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 28.00 0.01 0.05 62.22 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1516.00 0.69 2.82 68.38 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 401.00 0.18 0.75 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1048.00 0.48 1.95 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 17.00 0.01 0.03 37.78 WDR74-204 protein coding metanephros (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 10020.00 83.14 18.64 100.0 HSPA8-211 retained intron metanephros (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1612.00 25.91 3.00 100.0 SCARNA9-201 lncRNA metanephros (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 387.00 0.40 0.72 100.0 TAF1D-215 retained intron metanephros (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 90228.00 94.31 167.87 100.0 TAF1D-215 retained intron metanephros (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 190.00 3.36 0.35 100.0 HSPA8-215 retained intron metanephros (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 4572.00 80.91 8.51 100.0 HSPA8-215 retained intron metanephros (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 23.00 0.41 0.04 100.0 HSPA8-215 retained intron metanephros (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 540.00 19.64 1.00 100.0 RPS2-215 retained intron metanephros (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 2592685.00 79.75 4823.59 80.67 ENST00000548801 lncRNA metanephros (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1812.00 12.20 3.37 100.0 ENST00000554988 lncRNA metanephros (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 2866.00 19.30 5.33 100.0 ENST00000554988 lncRNA metanephros (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 119.00 0.80 0.22 100.0 ENST00000554988 lncRNA metanephros (Tissue)