ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 216.00 0.02 0.40 100.0 MT-TE-201 Mt tRNA metanephros (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 92.00 0.01 0.17 100.0 MT-TE-201 Mt tRNA metanephros (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 976959.00 89.58 1817.60 93.32 MT-TE-201 Mt tRNA metanephros (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 4981.00 61.03 9.27 100.0 MIR196A1-201 miRNA metanephros (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 791.00 13.53 1.47 100.0 MT-RNR1-201 Mt rRNA metanephros (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 1401.00 82.80 2.61 100.0 MIR454-201 miRNA metanephros (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 6454.00 68.51 12.01 100.0 MIR501-201 miRNA metanephros (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 2723.00 91.75 5.07 100.0 MIR769-201 miRNA metanephros (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 30.00 53.57 0.06 100.0 KRTAP19-1-201 protein coding metanephros (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 595.00 39.46 1.11 100.0 MIR708-201 miRNA metanephros (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 1285.00 86.18 2.39 100.0 MIR509-3-201 miRNA metanephros (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 16.00 55.17 0.03 100.0 MIR543-201 miRNA metanephros (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 204.00 95.77 0.38 100.0 MIR301B-201 miRNA metanephros (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 4292.00 61.79 7.99 74.08 RNU1-82P-201 snRNA metanephros (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4494.00 23.27 8.36 82.76 SNORD66-201 snoRNA metanephros (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 982.00 5.08 1.83 100.0 SNORD66-201 snoRNA metanephros (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 1125.00 5.82 2.09 100.0 SNORD66-201 snoRNA metanephros (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 4816.00 24.94 8.96 100.0 SNORD66-201 snoRNA metanephros (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 176.00 72.43 0.33 100.0 U3.17-201 snoRNA metanephros (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 8125.00 61.74 15.12 100.0 SNORD17-201 snoRNA metanephros (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 470.00 62.92 0.87 100.0 SNORD72-201 snoRNA metanephros (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 7184.00 78.65 13.37 100.0 SNORD70B-201 snoRNA metanephros (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 2034.00 58.08 3.78 93.22 RNY4P18-201 misc RNA metanephros (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 70409.00 84.75 130.99 100.0 SNORD90-201 snoRNA metanephros (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 9363.00 11.27 17.42 64.89 SNORD90-201 snoRNA metanephros (Tissue)