ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 18632.00 70.05 34.66 89.87 MIR130A-201 miRNA metanephros (Tissue)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 7687.00 28.90 14.30 45.75 MIR130A-201 miRNA metanephros (Tissue)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 152122.00 98.31 283.02 99.09 MIRLET7F2-201 miRNA metanephros (Tissue)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 330.00 63.34 0.61 100.0 MIR652-201 miRNA metanephros (Tissue)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 215.00 83.01 0.40 100.0 MIR653-201 miRNA metanephros (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1752.00 68.04 3.26 100.0 MIR140-201 miRNA metanephros (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 586.00 27.13 1.09 100.0 MIR106B-201 miRNA metanephros (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 386.00 17.87 0.72 73.52 MIR106B-201 miRNA metanephros (Tissue)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 32183.00 25.16 59.88 94.84 SNORD83A-201 snoRNA metanephros (Tissue)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 90764.00 70.96 168.86 98.55 SNORD83A-201 snoRNA metanephros (Tissue)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 2857.00 79.47 5.32 100.0 SNORD41-201 snoRNA metanephros (Tissue)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 25.00 2.46 0.05 100.0 MT-TF-201 Mt tRNA metanephros (Tissue)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 18.00 1.77 0.03 81.82 MT-TF-201 Mt tRNA metanephros (Tissue)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 22.00 2.16 0.04 53.66 MT-TF-201 Mt tRNA metanephros (Tissue)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 1498.00 29.82 2.79 100.0 MT-TV-201 Mt tRNA metanephros (Tissue)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 44.00 0.20 0.08 100.0 MT-RNR2-201 Mt rRNA metanephros (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 1818.00 8.26 3.38 89.03 MT-RNR2-201 Mt rRNA metanephros (Tissue)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 783.00 3.56 1.46 100.0 MT-RNR2-201 Mt rRNA metanephros (Tissue)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 83.00 0.38 0.15 100.0 MT-RNR2-201 Mt rRNA metanephros (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 1617.00 7.34 3.01 82.54 MT-RNR2-201 Mt rRNA metanephros (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 159.00 0.72 0.30 100.0 MT-RNR2-201 Mt rRNA metanephros (Tissue)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 12.00 0.05 0.02 100.0 MT-RNR2-201 Mt rRNA metanephros (Tissue)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 1893.00 56.22 3.52 95.85 MT-TI-201 Mt tRNA metanephros (Tissue)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 141.00 4.19 0.26 100.0 MT-TI-201 Mt tRNA metanephros (Tissue)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 749.50 13.25 1.39 61.74 MT-TQ-201 Mt tRNA metanephros (Tissue)