ENCFF000JEU

Library Details

Organism: Homo Sapiens
Biosample: thoracic aorta endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVA
Description: Part of ENCODE experiment ENCSR000CVA. The libraries contained in this experiment come from aortic adventital endothelial primary whole cells, HAoEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 15828.00 86.75 1212.79 100.0 SNHG6-204 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 3.00 0.42 0.23 100.0 WDR74-204 protein coding thoracic aorta endothelial cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 2.00 0.06 0.15 100.0 HSPA8-211 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 1780.00 55.57 136.39 64.26 HSPA8-211 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 907.00 82.01 69.50 100.0 RPS13-208 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 4324.00 81.03 331.32 100.0 HSPA8-215 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 294.00 71.88 22.53 100.0 RPL4-214 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 303.00 9.94 23.22 100.0 ENST00000570843 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 2018.00 66.23 154.62 100.0 ENST00000570843 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.08 0.07 95.15 C19orf48P-203 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.07 0.07 86.48 C19orf48P-203 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 691.00 57.87 52.95 100.0 C19orf48P-203 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 69.00 11.56 5.29 100.0 RPS11-206 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2.00 0.28 0.15 100.0 ENST00000602478 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 2366.00 56.51 181.29 100.0 NOP56-219 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 10.16 0.25 0.78 28.22 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 2.00 0.05 0.15 50.0 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 1373.00 34.11 105.20 100.0 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 31.00 0.77 2.38 50.82 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 26.43 0.66 2.03 73.43 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 37.38 0.93 2.86 64.44 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 14.75 0.37 1.13 35.97 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 9.00 4.79 0.69 100.0 SNHG14-224 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1012.00 0.29 77.54 100.0 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 104567.00 30.21 8012.21 95.24 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)