ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 6.00 9.09 0.01 100.0 HCN2-201 protein coding occipital lobe (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 27389.00 97.28 57.98 100.0 SLC49A4-201 protein coding occipital lobe (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 1723.00 20.40 3.65 100.0 ATP5MC3-201 protein coding occipital lobe (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 23.00 85.19 0.05 100.0 CDC25A-201 protein coding occipital lobe (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 809.00 76.83 1.71 100.0 BLOC1S4-201 protein coding occipital lobe (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 460.00 21.39 0.97 100.0 ATAD5-201 protein coding occipital lobe (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 85.00 16.67 0.18 100.0 SLITRK5-201 protein coding occipital lobe (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 14.00 31.82 0.03 100.0 HASPIN-201 protein coding occipital lobe (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 109.00 63.74 0.23 100.0 PRR14L-201 protein coding occipital lobe (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 1287.00 94.22 2.72 100.0 ATG101-201 protein coding occipital lobe (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 135.00 48.39 0.29 100.0 PRICKLE1-201 protein coding occipital lobe (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 70.00 94.59 0.15 100.0 MIR133A2-201 miRNA occipital lobe (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 4.00 28.57 0.01 100.0 PBLD-204 protein coding occipital lobe (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 843284.00 92.91 1785.11 99.28 MIRLET7BHG-201 lncRNA occipital lobe (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 30537.00 3.36 64.64 88.7 MIRLET7BHG-201 lncRNA occipital lobe (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 2.00 2.00 0.00 50.0 MIR375-201 miRNA occipital lobe (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 98.00 98.00 0.21 100.0 MIR375-201 miRNA occipital lobe (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 9249.00 74.88 19.58 100.0 MIR30E-201 miRNA occipital lobe (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2062.00 16.70 4.36 100.0 MIR30E-201 miRNA occipital lobe (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 737.00 38.65 1.56 100.0 MIR29A-201 miRNA occipital lobe (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 1208.00 90.28 2.56 100.0 MIR345-201 miRNA occipital lobe (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 155767.00 99.20 329.74 100.0 MIR16-2-201 miRNA occipital lobe (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 2587.00 4.99 5.48 100.0 MIR340-201 miRNA occipital lobe (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 46553.00 89.71 98.55 100.0 MIR340-201 miRNA occipital lobe (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 6905.00 82.93 14.62 100.0 MIR107-201 miRNA occipital lobe (Tissue)