ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 33.00 0.01 0.07 100.0 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 6.00 0.00 0.01 100.0 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 537.00 10.67 1.14 100.0 RPS11-206 retained intron occipital lobe (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 4087.00 81.20 8.65 100.0 RPS11-206 retained intron occipital lobe (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 21352.00 78.76 45.20 80.08 CARMN-209 lncRNA occipital lobe (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1373.00 39.48 2.91 100.0 ENST00000602478 lncRNA occipital lobe (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 4.00 8.00 0.01 100.0 PPFIA1P1-201 processed pseudogene occipital lobe (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 463.00 39.07 0.98 100.0 SNORD114-21-201 snoRNA occipital lobe (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 516.00 43.54 1.09 100.0 SNORD114-21-201 snoRNA occipital lobe (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 23774.00 46.94 50.33 100.0 SNORD115-40-201 snoRNA occipital lobe (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 18904.00 98.14 40.02 100.0 MIR98-201 miRNA occipital lobe (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 6426.00 97.53 13.60 100.0 SNORD113-5-201 snoRNA occipital lobe (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 5360.00 93.17 11.35 100.0 MIR15A-201 miRNA occipital lobe (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 150.00 83.33 0.32 100.0 MIR376C-201 miRNA occipital lobe (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 438.00 57.78 0.93 100.0 SNHG21-206 retained intron occipital lobe (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 323.00 57.47 0.68 100.0 SNORD11B-201 snoRNA occipital lobe (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1802.00 70.36 3.81 100.0 SNORD91B-201 snoRNA occipital lobe (Tissue)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 35.00 59.32 0.07 100.0 MIR219A2HG-201 lncRNA occipital lobe (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 10510.00 54.77 22.25 64.48 SNORD91A-201 snoRNA occipital lobe (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 6226.00 46.96 13.18 96.98 MIR486-1-201 miRNA occipital lobe (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 24586.00 37.65 52.05 76.53 NOP56-219 retained intron occipital lobe (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 584.00 0.89 1.24 100.0 NOP56-219 retained intron occipital lobe (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 684.00 1.05 1.45 100.0 NOP56-219 retained intron occipital lobe (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 21368.00 32.72 45.23 75.35 NOP56-219 retained intron occipital lobe (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 1554.00 24.77 3.29 51.0 RNA5-8SN2-201 rRNA occipital lobe (Tissue)