ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 5374.00 2.93 11.38 100.0 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1430.00 84.67 3.03 89.66 MIR3142HG-201 lncRNA occipital lobe (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 9730.00 90.80 20.60 100.0 SNHG6-204 retained intron occipital lobe (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 22511.00 33.04 47.65 100.0 MIR151A-201 miRNA occipital lobe (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 36442.00 53.49 77.14 83.62 MIR151A-201 miRNA occipital lobe (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 673.00 85.41 1.42 100.0 DENND3-221 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 79.00 0.00 0.17 57.66 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 24.00 0.00 0.05 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 27.00 0.00 0.06 65.85 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 927.00 0.04 1.96 65.56 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 14.00 0.00 0.03 34.15 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 187.00 0.01 0.40 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 259.00 0.01 0.55 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 209.00 0.01 0.44 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 9330.00 86.53 19.75 100.0 HSPA8-211 retained intron occipital lobe (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1890.00 29.14 4.00 100.0 SCARNA9-201 lncRNA occipital lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 59902.00 96.13 126.80 100.0 TAF1D-215 retained intron occipital lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 452.00 0.73 0.96 100.0 TAF1D-215 retained intron occipital lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 40.00 2.21 0.08 100.0 HSPA8-215 retained intron occipital lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 1303.00 71.99 2.76 100.0 HSPA8-215 retained intron occipital lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 34.00 1.88 0.07 100.0 HSPA8-215 retained intron occipital lobe (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 260.00 26.83 0.55 100.0 RPS2-215 retained intron occipital lobe (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 1333.00 84.15 2.82 85.78 ENST00000548801 lncRNA occipital lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 4959.00 38.42 10.50 100.0 ENST00000554988 lncRNA occipital lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 53.00 0.41 0.11 100.0 ENST00000554988 lncRNA occipital lobe (Tissue)