ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1393.00 0.26 2.95 53.25 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 903.00 0.17 1.91 38.64 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2348.00 0.44 4.97 94.26 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 265.00 0.05 0.56 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 665.00 0.13 1.41 40.13 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 12022.00 2.26 25.45 81.72 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 2062.00 0.39 4.36 65.63 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 65.00 0.01 0.14 44.83 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 2945.00 0.55 6.23 85.19 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 42503.00 8.00 89.97 55.52 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 230.00 0.04 0.49 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 451874.00 85.07 956.55 99.22 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1677.00 0.32 3.55 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 49.00 0.01 0.10 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 73.00 0.01 0.15 100.0 EIF4A2-219 retained intron occipital lobe (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 17433.00 97.14 36.90 100.0 RPS8-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 308.00 13.11 0.65 100.0 RPL7A-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 817.00 34.77 1.73 100.0 RPL7A-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 333.00 14.17 0.70 100.0 RPL7A-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 1489849.00 94.16 3153.80 99.55 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 623.00 0.04 1.32 100.0 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1228.00 0.08 2.60 100.0 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 5231.00 0.33 11.07 100.0 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 79895.00 5.05 169.13 97.19 RPL21-209 retained intron occipital lobe (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 42.00 28.57 0.09 100.0 GABRE-209 retained intron occipital lobe (Tissue)