ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 474.00 10.58 1.00 100.0 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1853.00 74.42 3.92 94.98 SNHG16-201 lncRNA occipital lobe (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 314.00 12.61 0.66 100.0 SNHG16-201 lncRNA occipital lobe (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 7414.00 22.19 15.69 100.0 SNHG14-207 lncRNA occipital lobe (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 155942.00 93.55 330.11 97.46 SNORD105B-201 snoRNA occipital lobe (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 2482.00 41.56 5.25 52.88 SNORD121B-201 snoRNA occipital lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 62.00 0.04 0.13 100.0 SNORD127-201 snoRNA occipital lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 147168.00 97.10 311.53 99.24 SNORD127-201 snoRNA occipital lobe (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 18248.00 94.59 38.63 100.0 SNORD42B-201 snoRNA occipital lobe (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 148.00 0.73 0.31 100.0 RNY4P25-201 misc RNA occipital lobe (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1544.00 76.17 3.27 100.0 SNORD121A-201 snoRNA occipital lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 5540.00 81.33 11.73 94.06 SNORD126-201 snoRNA occipital lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1035.00 15.19 2.19 56.01 SNORD126-201 snoRNA occipital lobe (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 32721.00 95.09 69.27 96.94 SNORD124-201 snoRNA occipital lobe (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 91.00 12.21 0.19 100.0 SNHG12-201 retained intron occipital lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3494.00 33.23 7.40 100.0 RPL3-212 retained intron occipital lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 4363.00 41.49 9.24 92.44 RPL3-212 retained intron occipital lobe (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 22500.00 96.58 47.63 100.0 SMC1A-204 retained intron occipital lobe (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 16412.00 88.55 34.74 98.09 RABGGTB-208 protein coding CDS not defined occipital lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 13866.00 59.95 29.35 82.26 DDX39B-219 retained intron occipital lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 898.00 3.88 1.90 100.0 DDX39B-219 retained intron occipital lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 2211.00 9.56 4.68 100.0 DDX39B-219 retained intron occipital lobe (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 4099.00 80.42 8.68 100.0 RPS8-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 197357.00 96.55 417.78 99.48 RPL13-207 retained intron occipital lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2540.00 1.24 5.38 100.0 RPL13-207 retained intron occipital lobe (Tissue)