ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 459.00 0.77 0.97 100.0 SNORD19C-201 snoRNA occipital lobe (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 57442.00 96.91 121.60 99.28 SNORD19C-201 snoRNA occipital lobe (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1916.00 1.66 4.06 100.0 SNORD12B-201 snoRNA occipital lobe (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 165.00 0.14 0.35 100.0 SNORD12B-201 snoRNA occipital lobe (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 109427.00 94.99 231.64 98.86 SNORD12B-201 snoRNA occipital lobe (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 4015.00 36.08 8.50 100.0 Y_RNA.609-201 misc RNA occipital lobe (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 404.00 19.06 0.86 100.0 Y_RNA.612-201 misc RNA occipital lobe (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 3175.00 1.57 6.72 100.0 SNORD71-201 snoRNA occipital lobe (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 672.00 0.33 1.42 100.0 SNORD71-201 snoRNA occipital lobe (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 194877.00 96.57 412.53 99.3 SNORD71-201 snoRNA occipital lobe (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 2187.00 17.77 4.63 61.33 MIR194-2HG-201 lncRNA occipital lobe (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 9549.00 77.60 20.21 92.71 MIR194-2HG-201 lncRNA occipital lobe (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 23.00 1.37 0.05 100.0 LINC01783-201 lncRNA occipital lobe (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 38.00 88.37 0.08 100.0 RPS7P15-201 processed pseudogene occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 540.00 9.26 1.14 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 347.00 5.95 0.73 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 26.00 0.45 0.06 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 257.00 4.41 0.54 100.0 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 2719.00 46.61 5.76 91.92 SNORD62B-201 snoRNA occipital lobe (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 15.00 65.22 0.03 100.0 MRPL32-203 nonsense mediated decay occipital lobe (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 682.00 98.41 1.44 100.0 ENST00000436739 lncRNA occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 814.00 18.17 1.72 63.49 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 143.00 3.19 0.30 100.0 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 28.00 0.62 0.06 100.0 TMEM107-204 protein coding occipital lobe (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 162.00 3.62 0.34 60.45 TMEM107-204 protein coding occipital lobe (Tissue)