ENCFF001RMD

Library Details

Organism: Homo Sapiens
Biosample: uterus (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGH
Description: Part of ENCODE experiment ENCSR000AGH. The libraries contained in this experiment come from human fetal uterus tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 7226.00 7.68 11.95 100.0 ENST00000582320 lncRNA uterus (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 9460.00 10.06 15.65 100.0 ENST00000582320 lncRNA uterus (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1733.00 2.46 2.87 100.0 RPL17-214 retained intron uterus (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 33706.10 47.87 55.76 57.4 RPL17-214 retained intron uterus (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 34020.22 48.32 56.28 54.29 RPL17-214 retained intron uterus (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 231.00 0.16 0.38 100.0 SNORD43-201 snoRNA uterus (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 137355.00 97.01 227.23 99.98 SNORD43-201 snoRNA uterus (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 260.00 0.18 0.43 100.0 SNORD43-201 snoRNA uterus (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 764.00 41.30 1.26 100.0 MIR151B-201 miRNA uterus (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 1219.00 2.40 2.02 100.0 SNORD3A-201 snoRNA uterus (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 15030.00 83.85 24.86 100.0 SNORD92-201 snoRNA uterus (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 7246.00 58.50 11.99 100.0 NSRP1-214 protein coding uterus (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3252.00 26.25 5.38 75.0 NSRP1-214 protein coding uterus (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 150.00 0.39 0.25 100.0 MIR23AHG-201 lncRNA uterus (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 16568.00 42.66 27.41 93.56 MIR23AHG-201 lncRNA uterus (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 4516.00 11.63 7.47 87.23 MIR23AHG-201 lncRNA uterus (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3959.00 10.19 6.55 68.2 MIR23AHG-201 lncRNA uterus (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 9072.00 23.36 15.01 87.15 MIR23AHG-201 lncRNA uterus (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 53.00 35.33 0.09 100.0 MIR122HG-201 lncRNA uterus (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 62.00 41.61 0.10 100.0 ODAD3-204 nonsense mediated decay uterus (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 164.00 0.27 0.27 100.0 VMP1-217 retained intron uterus (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 4.00 0.01 0.01 100.0 VMP1-217 retained intron uterus (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 32886.00 54.29 54.40 59.21 VMP1-217 retained intron uterus (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1332.00 0.07 2.20 100.0 C19orf48P-203 retained intron uterus (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1556111.56 77.26 2574.29 84.77 C19orf48P-203 retained intron uterus (Tissue)