ENCFF001RMD

Library Details

Organism: Homo Sapiens
Biosample: uterus (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGH
Description: Part of ENCODE experiment ENCSR000AGH. The libraries contained in this experiment come from human fetal uterus tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1093.00 2.57 1.81 100.0 TMEM107-204 protein coding uterus (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 3642.00 59.00 6.02 90.89 SNHG16-201 lncRNA uterus (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1310.00 21.22 2.17 100.0 SNHG16-201 lncRNA uterus (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 328.00 34.06 0.54 100.0 SNHG14-207 lncRNA uterus (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 192399.00 86.21 318.29 96.66 SNORD105B-201 snoRNA uterus (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 5722.00 49.52 9.47 72.38 SNORD121B-201 snoRNA uterus (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 1047.00 1.09 1.73 100.0 SNORD127-201 snoRNA uterus (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 88140.00 92.02 145.81 99.25 SNORD127-201 snoRNA uterus (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 19318.00 93.86 31.96 100.0 SNORD42B-201 snoRNA uterus (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 162.00 1.16 0.27 100.0 RNY4P25-201 misc RNA uterus (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 2310.00 70.41 3.82 100.0 SNORD121A-201 snoRNA uterus (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 16690.00 72.68 27.61 87.67 SNORD126-201 snoRNA uterus (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 4974.00 21.66 8.23 73.55 SNORD126-201 snoRNA uterus (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 43043.00 90.39 71.21 95.55 SNORD124-201 snoRNA uterus (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 82.00 1.77 0.14 100.0 SNHG12-201 retained intron uterus (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 21143.00 33.25 34.98 100.0 RPL3-212 retained intron uterus (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 24333.00 38.27 40.25 87.84 RPL3-212 retained intron uterus (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 36599.00 96.66 60.55 100.0 SMC1A-204 retained intron uterus (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 38686.00 85.19 64.00 98.35 RABGGTB-208 protein coding CDS not defined uterus (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 13697.00 46.71 22.66 76.12 DDX39B-219 retained intron uterus (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 530.00 1.81 0.88 100.0 DDX39B-219 retained intron uterus (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1395.00 4.76 2.31 100.0 DDX39B-219 retained intron uterus (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3241.00 58.74 5.36 100.0 RPS8-206 protein coding CDS not defined uterus (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 328445.00 94.37 543.35 99.48 RPL13-207 retained intron uterus (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 5366.00 1.54 8.88 100.0 RPL13-207 retained intron uterus (Tissue)