ENCFF001RMB

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 91402.00 62.52 295.01 82.33 ENST00000582320 lncRNA skeletal muscle tissue (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 14523.00 9.93 46.87 100.0 ENST00000582320 lncRNA skeletal muscle tissue (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 13104.00 8.96 42.29 100.0 ENST00000582320 lncRNA skeletal muscle tissue (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 595.00 1.83 1.92 100.0 RPL17-214 retained intron skeletal muscle tissue (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 13946.96 42.81 45.01 49.63 RPL17-214 retained intron skeletal muscle tissue (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 16829.30 51.66 54.32 55.74 RPL17-214 retained intron skeletal muscle tissue (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 962.00 0.22 3.10 100.0 SNORD43-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 422305.00 98.45 1363.02 99.96 SNORD43-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 729.00 0.17 2.35 100.0 SNORD43-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 430.00 41.71 1.39 100.0 MIR151B-201 miRNA skeletal muscle tissue (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 44.00 0.43 0.14 100.0 SNORD3A-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 15365.00 88.61 49.59 100.0 SNORD92-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 9955.00 63.18 32.13 100.0 NSRP1-214 protein coding skeletal muscle tissue (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3856.00 24.47 12.45 82.89 NSRP1-214 protein coding skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 9607.00 16.90 31.01 93.25 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 32.00 0.06 0.10 100.0 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 27041.00 47.58 87.28 96.44 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 7540.00 13.27 24.34 79.58 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 4835.00 8.51 15.61 66.65 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 25.00 47.17 0.08 100.0 MIR122HG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 322.00 63.26 1.04 100.0 ODAD3-204 nonsense mediated decay skeletal muscle tissue (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1798.00 2.28 5.80 100.0 VMP1-217 retained intron skeletal muscle tissue (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 29.00 0.04 0.09 100.0 VMP1-217 retained intron skeletal muscle tissue (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 38962.00 49.30 125.75 55.05 VMP1-217 retained intron skeletal muscle tissue (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 345.00 0.05 1.11 100.0 C19orf48P-203 retained intron skeletal muscle tissue (Tissue)