ENCFF001RMA

Library Details

Organism: Homo Sapiens
Biosample: skin of body (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGA
Description: Part of ENCODE experiment ENCSR000AGA. The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 1881.00 20.92 4.63 100.0 GABRE-209 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 987.00 0.30 2.43 63.8 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 5747.00 1.75 14.16 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 266556.00 81.15 656.65 98.03 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 11250.00 3.42 27.71 83.57 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 792.00 0.24 1.95 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 10.00 0.00 0.02 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 11.00 0.00 0.03 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 265.00 0.08 0.65 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 2262.00 26.72 5.57 100.0 RPL7A-207 protein coding CDS not defined skin of body (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 2327.00 27.49 5.73 81.14 RPL7A-207 protein coding CDS not defined skin of body (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 109.00 1.29 0.27 100.0 RPL7A-207 protein coding CDS not defined skin of body (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 214.00 3.85 0.53 100.0 RN7SL2-201 misc RNA skin of body (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 123.00 2.21 0.30 40.73 RN7SL2-201 misc RNA skin of body (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1.00 10.00 0.00 100.0 RGS11-208 retained intron skin of body (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 16379.00 69.56 40.35 89.0 NOP56-217 protein coding CDS not defined skin of body (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1676.00 7.12 4.13 80.73 NOP56-217 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 646.00 0.59 1.59 29.42 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 833.00 0.76 2.05 100.0 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 876.00 0.79 2.16 100.0 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 1550.00 1.41 3.82 70.58 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 60713.00 55.03 149.56 91.29 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 31122.00 28.21 76.67 96.21 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 135.00 0.12 0.33 100.0 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 26951.00 72.84 66.39 100.0 GNL3-211 retained intron skin of body (Tissue)