ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 4936.00 87.02 14.08 100.0 SNHG6-204 retained intron diencephalon (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 38782.00 46.94 110.64 85.07 MIR151A-201 miRNA diencephalon (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 34710.00 42.01 99.02 100.0 MIR151A-201 miRNA diencephalon (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1878.00 77.80 5.36 100.0 DENND3-221 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 575.00 0.19 1.64 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 209.00 0.07 0.60 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 60.00 0.02 0.17 66.67 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 10.00 0.00 0.03 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 15.00 0.00 0.04 62.5 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1374.00 0.45 3.92 71.38 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 327.00 0.11 0.93 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 9.00 0.00 0.03 37.5 WDR74-204 protein coding diencephalon (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 9418.00 83.81 26.87 100.0 HSPA8-211 retained intron diencephalon (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1128.00 19.50 3.22 100.0 SCARNA9-201 lncRNA diencephalon (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 19658.00 91.83 56.08 100.0 TAF1D-215 retained intron diencephalon (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 206.00 0.96 0.59 100.0 TAF1D-215 retained intron diencephalon (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 268.00 6.18 0.76 100.0 HSPA8-215 retained intron diencephalon (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 3082.00 71.06 8.79 100.0 HSPA8-215 retained intron diencephalon (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 21.00 0.48 0.06 100.0 HSPA8-215 retained intron diencephalon (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 551.00 28.46 1.57 100.0 RPS2-215 retained intron diencephalon (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 5042.00 89.24 14.38 90.49 ENST00000548801 lncRNA diencephalon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 694.00 9.43 1.98 100.0 ENST00000554988 lncRNA diencephalon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1501.00 20.39 4.28 100.0 ENST00000554988 lncRNA diencephalon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 198.00 2.69 0.56 100.0 ENST00000554988 lncRNA diencephalon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1203.00 0.70 3.43 100.0 SNHG14-220 retained intron diencephalon (Tissue)