ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 6.00 2.55 0.01 100.0 Y_RNA.14-201 misc RNA spinal cord (Tissue)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 17359.00 25.37 31.83 100.0 SNORD115-34-201 snoRNA spinal cord (Tissue)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 1970.00 42.57 3.61 100.0 RNU5E-1-201 snRNA spinal cord (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 3.00 0.04 0.01 16.67 RNA5SP370-201 rRNA pseudogene spinal cord (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 789.00 52.78 1.45 100.0 SNORA31-201 snoRNA spinal cord (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 40.00 0.53 0.07 71.43 RNA5SP389-201 rRNA pseudogene spinal cord (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 20.00 0.27 0.04 100.0 RNA5SP389-201 rRNA pseudogene spinal cord (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 42.00 0.56 0.08 60.0 RNA5SP389-201 rRNA pseudogene spinal cord (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 1.00 0.01 0.00 100.0 RNA5SP389-201 rRNA pseudogene spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 1981.00 2.46 3.63 100.0 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 10944.00 13.60 20.07 73.65 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 8055.50 10.01 14.77 37.72 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 4720.00 5.87 8.65 75.09 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 2960.00 3.68 5.43 78.08 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 2551.00 3.17 4.68 57.44 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 244.00 0.30 0.45 100.0 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 583.00 0.72 1.07 34.58 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 5421.00 6.74 9.94 45.89 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1268.10 1.58 2.33 52.51 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2076.00 2.58 3.81 54.52 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 1706.00 2.12 3.13 100.0 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 14118.16 17.55 25.89 69.98 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 1175.59 1.46 2.16 35.87 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1588.00 1.97 2.91 88.32 RNU5A-1-201 snRNA spinal cord (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 6017.00 73.58 11.03 100.0 SNORD114-14-201 snoRNA spinal cord (Tissue)