ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 582602.00 79.32 1068.30 90.67 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 5602.00 0.76 10.27 80.86 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 4035.00 0.55 7.40 100.0 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 2368.00 0.32 4.34 37.09 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 4017.00 0.55 7.37 69.65 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 3306.00 0.45 6.06 100.0 MT-TE-201 Mt tRNA spinal cord (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 8212.00 67.66 15.06 100.0 MIR196A1-201 miRNA spinal cord (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 1440.00 6.45 2.64 100.0 MT-RNR1-201 Mt rRNA spinal cord (Tissue)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 602.00 2.70 1.10 100.0 MT-RNR1-201 Mt rRNA spinal cord (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 9555.00 82.02 17.52 100.0 MIR454-201 miRNA spinal cord (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 75.00 17.52 0.14 100.0 MIR501-201 miRNA spinal cord (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 47558.00 93.45 87.21 100.0 MIR769-201 miRNA spinal cord (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 98.00 56.00 0.18 100.0 KRTAP19-1-201 protein coding spinal cord (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 4282.00 46.96 7.85 100.0 MIR708-201 miRNA spinal cord (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 130.00 87.84 0.24 100.0 MIR509-3-201 miRNA spinal cord (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 370.00 52.86 0.68 100.0 MIR543-201 miRNA spinal cord (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 246.00 97.23 0.45 100.0 MIR301B-201 miRNA spinal cord (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 11380.00 61.08 20.87 74.59 RNU1-82P-201 snRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 655.00 3.14 1.20 100.0 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 7079.00 33.92 12.98 100.0 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 51.00 0.24 0.09 100.0 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4826.00 23.12 8.85 78.61 SNORD66-201 snoRNA spinal cord (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 1259.00 73.71 2.31 100.0 U3.17-201 snoRNA spinal cord (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 4285.00 47.12 7.86 100.0 SNORD17-201 snoRNA spinal cord (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 39.00 25.66 0.07 100.0 SNORD72-201 snoRNA spinal cord (Tissue)