ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 462.00 19.57 1.50 100.0 SNHG16-201 lncRNA occipital lobe (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1561.00 66.12 5.06 91.77 SNHG16-201 lncRNA occipital lobe (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 4294.00 22.57 13.92 100.0 SNHG14-207 lncRNA occipital lobe (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 138260.00 94.65 448.07 97.62 SNORD105B-201 snoRNA occipital lobe (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3125.00 51.71 10.13 67.48 SNORD121B-201 snoRNA occipital lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 112942.00 96.93 366.02 99.31 SNORD127-201 snoRNA occipital lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 12.00 0.01 0.04 100.0 SNORD127-201 snoRNA occipital lobe (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 10683.00 91.68 34.62 100.0 SNORD42B-201 snoRNA occipital lobe (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 74.00 0.62 0.24 100.0 RNY4P25-201 misc RNA occipital lobe (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1333.00 70.45 4.32 100.0 SNORD121A-201 snoRNA occipital lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1139.00 18.62 3.69 57.29 SNORD126-201 snoRNA occipital lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 4797.00 78.41 15.55 91.22 SNORD126-201 snoRNA occipital lobe (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 33505.00 94.31 108.58 96.3 SNORD124-201 snoRNA occipital lobe (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 37.00 6.67 0.12 100.0 SNHG12-201 retained intron occipital lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 4928.00 45.00 15.97 91.31 RPL3-212 retained intron occipital lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3809.00 34.78 12.34 100.0 RPL3-212 retained intron occipital lobe (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 14063.00 96.19 45.57 100.0 SMC1A-204 retained intron occipital lobe (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 17194.00 90.64 55.72 98.35 RABGGTB-208 protein coding CDS not defined occipital lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 9674.00 58.25 31.35 83.35 DDX39B-219 retained intron occipital lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 863.00 5.20 2.80 100.0 DDX39B-219 retained intron occipital lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1470.00 8.85 4.76 100.0 DDX39B-219 retained intron occipital lobe (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 4944.00 84.79 16.02 100.0 RPS8-206 protein coding CDS not defined occipital lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 157149.00 96.80 509.28 99.59 RPL13-207 retained intron occipital lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2007.00 1.24 6.50 100.0 RPL13-207 retained intron occipital lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 904.00 0.13 2.93 36.84 EIF4A2-219 retained intron occipital lobe (Tissue)