ENCFF000JEI

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of the aortic adventitia (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUV
Description: Part of ENCODE experiment ENCSR000CUV. The libraries contained in this experiment come from aortic adventital fibroblast primary whole cells, HAoAF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 45013.00 76.50 2378.92 100.0 SNHG6-204 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 6.00 1.06 0.32 54.55 WDR74-204 protein coding fibroblast of the aortic adventitia (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 4543.00 55.48 240.10 66.45 HSPA8-211 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 1667.00 85.71 88.10 100.0 RPS13-208 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3195.00 82.24 168.85 100.0 HSPA8-215 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 2.00 0.35 0.11 100.0 RBMX-210 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 2249.00 77.10 118.86 100.0 RPL4-214 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 265.00 48.71 14.01 100.0 ENST00000570843 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 110.00 20.22 5.81 100.0 ENST00000570843 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.09 0.10 27.19 C19orf48P-203 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 2.59 0.12 0.14 86.48 C19orf48P-203 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1502.00 67.84 79.38 100.0 C19orf48P-203 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 311.00 29.48 16.44 100.0 RPS11-206 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1.00 0.33 0.05 100.0 ENST00000602478 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1127.00 51.77 59.56 100.0 NOP56-219 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 23.95 0.38 1.27 34.71 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1.00 0.02 0.05 33.33 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3038.00 48.77 160.56 100.0 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 14.00 0.22 0.74 100.0 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 48.06 0.77 2.54 69.65 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 6.21 0.10 0.33 69.0 U2.3-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 54.00 7.39 2.85 100.0 SNHG14-224 lncRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1352.00 0.22 71.45 100.0 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 345588.00 56.76 18264.23 95.84 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.05 100.0 GAS5-230 retained intron fibroblast of the aortic adventitia (Primary cell)