ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 22.00 0.50 0.07 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 85.00 1.93 0.29 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 25.00 0.57 0.08 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 8037.00 1.61 27.30 95.6 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 791.00 0.16 2.69 66.03 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 357.00 0.07 1.21 56.4 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 783.00 18.87 2.66 41.43 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 1259.00 95.02 4.28 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 73.00 7.29 0.25 79.35 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 221.00 86.33 0.75 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 335.00 1.16 1.14 82.11 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 73.00 0.25 0.25 17.89 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 13004.00 45.10 44.18 84.6 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 4591.04 31.81 15.60 46.75 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 612.00 4.24 2.08 73.03 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 6767.16 46.89 22.99 62.47 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 68398.00 89.95 232.36 96.09 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 307.00 8.90 1.04 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 2668.00 36.93 9.06 89.56 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 160.00 0.02 0.54 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 430.00 0.13 1.46 41.39 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 135.00 26.63 0.46 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 190.00 15.07 0.65 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 659318.00 97.93 2239.85 99.85 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA spinal cord (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 248.00 1.96 0.84 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA spinal cord (Tissue)