ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 1255.00 31.66 4.26 100.0 MEG9-206 lncRNA spinal cord (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 481.00 13.21 1.63 100.0 DNAJC5-203 nonsense mediated decay spinal cord (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 627.00 18.87 2.13 100.0 ENST00000707189 TEC spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 136.00 0.07 0.46 100.0 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 107165.87 55.31 364.07 59.46 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 30.00 0.02 0.10 100.0 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 233.00 0.12 0.79 100.0 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 82028.66 42.33 278.67 45.28 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 3809.00 1.97 12.94 100.0 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 131.00 0.07 0.45 100.0 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 1239.00 0.64 4.21 100.0 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 465.00 0.24 1.58 100.0 MIR17HG-214 lncRNA spinal cord (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 1854.00 0.40 6.30 100.0 SNHG32-223 lncRNA spinal cord (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 1507.00 0.33 5.12 100.0 SNHG32-223 lncRNA spinal cord (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 839.00 0.18 2.85 100.0 SNHG32-223 lncRNA spinal cord (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3990.00 0.86 13.55 61.94 SNHG32-223 lncRNA spinal cord (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 445480.00 96.08 1513.39 100.0 SNHG32-223 lncRNA spinal cord (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 30386.00 79.81 103.23 96.48 SNHG32-227 lncRNA spinal cord (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 397.00 1.04 1.35 100.0 SNHG32-227 lncRNA spinal cord (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 788.00 2.07 2.68 100.0 SNHG32-227 lncRNA spinal cord (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 1052.00 2.76 3.57 100.0 SNHG32-227 lncRNA spinal cord (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 252.00 79.00 0.86 100.0 B4GALT1-203 nonsense mediated decay spinal cord (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 1722.00 3.25 5.85 100.0 ENST00000722183 lncRNA spinal cord (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 25626.00 48.42 87.06 79.21 ENST00000722183 lncRNA spinal cord (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 6047.00 11.42 20.54 100.0 ENST00000722183 lncRNA spinal cord (Tissue)