ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 6233.00 0.96 15.82 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 7537.00 1.16 19.13 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 37738.29 5.80 95.78 39.77 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 3720.00 0.57 9.44 100.0 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 12119.71 1.86 30.76 34.06 RNA5SP202-201 rRNA pseudogene K562 (Cell line)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 30.00 24.39 0.08 100.0 SNORD114-9-201 snoRNA K562 (Cell line)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 19.00 15.45 0.05 100.0 SNORD114-9-201 snoRNA K562 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 20125.00 62.89 51.08 100.0 Y_RNA.234-201 misc RNA K562 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 531.00 0.06 1.35 100.0 RNA5S9-201 rRNA K562 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 18624.00 3.53 47.27 100.0 RNA5SP141-201 rRNA pseudogene K562 (Cell line)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 11.00 24.44 0.03 100.0 SNORD114-15-201 snoRNA K562 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 6011.00 81.12 15.26 100.0 ENST00000364722 snoRNA K562 (Cell line)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 3.00 12.50 0.01 100.0 SNORD113-3-201 snoRNA K562 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 11762.00 30.99 29.85 100.0 SNORD52-201 snoRNA K562 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 613.00 21.34 1.56 41.81 SNORD117-201 snoRNA K562 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 875.00 30.46 2.22 58.8 SNORD117-201 snoRNA K562 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 17.00 30.36 0.04 41.46 SNORD114-3-201 snoRNA K562 (Cell line)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 1.00 1.79 0.00 100.0 SNORD114-3-201 snoRNA K562 (Cell line)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 7.00 12.50 0.02 100.0 SNORD114-3-201 snoRNA K562 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 1720.00 3.00 4.37 100.0 RNA5SP298-201 rRNA pseudogene K562 (Cell line)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 23.00 48.94 0.06 100.0 SNORD113-9-201 snoRNA K562 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 4799.00 16.48 12.18 100.0 SNORD38A-201 snoRNA K562 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 623.00 2.14 1.58 100.0 SNORD38A-201 snoRNA K562 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 20548.00 70.54 52.15 100.0 SNORD38A-201 snoRNA K562 (Cell line)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 72.00 56.69 0.18 87.8 SNORD114-20-201 snoRNA K562 (Cell line)