ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1517.00 23.43 3.85 78.4 MIR222HG-206 lncRNA K562 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 344.00 5.31 0.87 100.0 MIR222HG-206 lncRNA K562 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 38.00 4.80 0.10 100.0 RPSA-216 retained intron K562 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 32.00 36.78 0.08 100.0 MIR99AHG-370 lncRNA K562 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 22.00 25.29 0.06 100.0 MIR99AHG-370 lncRNA K562 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 20080.00 97.66 50.96 100.0 HPS4-237 retained intron K562 (Cell line)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 287.00 77.36 0.73 100.0 MEG8-253 lncRNA K562 (Cell line)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 11.00 8.03 0.03 100.0 MEG9-206 lncRNA K562 (Cell line)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1.00 0.73 0.00 100.0 MEG9-206 lncRNA K562 (Cell line)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 22.00 16.06 0.06 100.0 MEG9-206 lncRNA K562 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 12092.00 11.83 30.69 100.0 DNAJC5-203 nonsense mediated decay K562 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 5256.00 11.72 13.34 100.0 ENST00000707189 TEC K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 84178.00 3.52 213.63 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 2748.00 0.11 6.97 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 778178.86 32.50 1974.93 42.26 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 12393.00 0.52 31.45 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 1112673.66 46.47 2823.85 57.61 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 140888.00 5.88 357.56 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 10129.00 0.42 25.71 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 32467.00 1.36 82.40 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 44709.00 1.87 113.47 100.0 MIR17HG-214 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 169947.00 13.47 431.31 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 2614.00 0.21 6.63 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 690.00 0.05 1.75 100.0 SNHG32-223 lncRNA K562 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 23370.00 1.85 59.31 92.08 SNHG32-223 lncRNA K562 (Cell line)