ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 2302.00 0.17 5.84 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 516.00 0.04 1.31 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 399330.00 30.33 1013.46 98.57 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 166.00 0.01 0.42 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 10110.00 0.77 25.66 93.78 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 627.00 0.05 1.59 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 50.00 0.00 0.13 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 2.00 0.00 0.01 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 16140.00 1.23 40.96 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1634.00 0.12 4.15 89.98 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 33.25 0.00 0.08 42.63 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 481.00 0.04 1.22 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 549.00 0.04 1.39 58.65 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 493.00 0.04 1.25 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 134.00 0.01 0.34 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 317.00 0.02 0.80 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 7.00 18.42 0.02 100.0 SNHG14-315 lncRNA K562 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 2.00 5.26 0.01 100.0 SNHG14-315 lncRNA K562 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 5.00 13.16 0.01 100.0 SNHG14-315 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 781.00 0.23 1.98 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 25111.35 7.40 63.73 24.23 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 113.00 0.03 0.29 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 1660.00 0.49 4.21 100.0 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 108323.36 31.91 274.91 81.22 SNHG5-273 lncRNA K562 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 1653.00 0.49 4.20 57.02 SNHG5-273 lncRNA K562 (Cell line)