ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 1387.00 0.09 3.52 56.38 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1837.00 0.12 4.66 31.68 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 813042.00 51.51 2063.41 86.67 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 4615.00 0.29 11.71 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 665295.00 42.15 1688.45 96.67 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 27900.00 1.77 70.81 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2909.00 0.18 7.38 60.45 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 24.00 0.00 0.06 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1161.00 0.07 2.95 42.59 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1957.00 0.12 4.97 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 53.00 0.00 0.13 100.0 EIF4A2-219 retained intron K562 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 26710.00 95.66 67.79 100.0 RPS8-207 protein coding CDS not defined K562 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 238.00 6.52 0.60 100.0 RPL7A-206 protein coding CDS not defined K562 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 352.00 9.64 0.89 100.0 RPL7A-206 protein coding CDS not defined K562 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 2086.00 57.10 5.29 100.0 RPL7A-206 protein coding CDS not defined K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 311.00 0.07 0.79 100.0 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 227875.00 49.18 578.32 99.63 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 220843.00 47.66 560.48 94.22 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 542.00 0.12 1.38 100.0 RPL21-209 retained intron K562 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1097.00 0.24 2.78 100.0 RPL21-209 retained intron K562 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 6550.00 17.14 16.62 100.0 GABRE-209 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 48.00 0.02 0.12 19.43 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 281036.00 89.37 713.24 99.42 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 9.00 0.00 0.02 100.0 RPL13A-212 retained intron K562 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 85.00 0.03 0.22 100.0 RPL13A-212 retained intron K562 (Cell line)