ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 3214.00 31.84 8.16 100.0 SNORD90-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 175.00 0.63 0.44 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 132.00 0.47 0.34 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 2556.00 9.19 6.49 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 22553.00 81.05 57.24 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 443.00 23.35 1.12 95.68 SNORD70-201 snoRNA K562 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 20263.00 3.22 51.43 100.0 B4GALNT2-202 protein coding K562 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 475001.00 75.54 1205.50 84.51 B4GALNT2-202 protein coding K562 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 4392.00 90.09 11.15 100.0 NDE1-202 protein coding K562 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 184.00 46.12 0.47 100.0 MIR450B-201 miRNA K562 (Cell line)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 198.00 90.83 0.50 100.0 MIR889-201 miRNA K562 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 3244.00 57.66 8.23 100.0 SNORD111-201 snoRNA K562 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 2021.00 24.11 5.13 49.29 SNORD88A-201 snoRNA K562 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 4883.00 95.97 12.39 100.0 MIR548K-201 miRNA K562 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 461.00 55.14 1.17 100.0 MIR320B2-201 miRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1515.00 0.49 3.84 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 300600.00 96.60 762.89 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 151.00 0.05 0.38 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 372.00 0.12 0.94 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 888.00 47.21 2.25 100.0 SNORD111B-201 snoRNA K562 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 778.00 23.48 1.97 100.0 RNU2-36P-201 snRNA K562 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 37.00 1.12 0.09 100.0 RNU2-36P-201 snRNA K562 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 673.00 0.51 1.71 100.0 SNORD19C-201 snoRNA K562 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 103735.00 78.53 263.27 87.06 SNORD19C-201 snoRNA K562 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 134253.00 85.66 340.72 95.31 SNORD12B-201 snoRNA K562 (Cell line)