ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 824.00 11.64 1.53 100.0 ATP5MK-205 protein coding K562 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 1781.00 32.52 3.31 100.0 LINC01556-201 lncRNA K562 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 2310.00 69.06 4.29 100.0 ATAD3A-202 protein coding K562 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 3818.00 59.63 7.10 72.54 TMC5-202 protein coding K562 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 1968.00 95.26 3.66 100.0 ZMYM2-203 protein coding K562 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 1180.00 6.47 2.19 100.0 RNVU1-7-201 snRNA K562 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 31295.00 92.03 58.18 100.0 SNORD24-201 snoRNA K562 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 2124.00 87.77 3.95 100.0 Y_RNA.389-201 misc RNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 174328.00 81.06 324.07 97.83 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 834.00 0.39 1.55 100.0 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 407.00 0.19 0.76 100.0 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 29920.00 13.91 55.62 87.51 SNORD101-201 snoRNA K562 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 509981.00 98.45 948.03 100.0 SNORD37-201 snoRNA K562 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 34496.00 55.99 64.13 90.28 SNORD59A-201 snoRNA K562 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 531.00 63.59 0.99 100.0 SNORA7B-201 snoRNA K562 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 395.00 68.10 0.73 100.0 SNORD14D-201 snoRNA K562 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 65.00 3.90 0.12 100.0 Y_RNA.555-201 misc RNA K562 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 103791.00 89.49 192.94 93.06 MIR25-201 miRNA K562 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 4218.00 75.05 7.84 98.78 MIR99B-201 miRNA K562 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 552.00 74.90 1.03 90.64 MIR23B-201 miRNA K562 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 118.00 16.01 0.22 61.78 MIR23B-201 miRNA K562 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 662.00 60.68 1.23 100.0 MIR199B-201 miRNA K562 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 370.00 33.91 0.69 92.27 MIR199B-201 miRNA K562 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 5856.00 95.75 10.89 100.0 MIR30B-201 miRNA K562 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 101.00 87.83 0.19 100.0 MIR181D-201 miRNA K562 (Cell line)