ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 2783.00 38.55 5.17 100.0 SNORD90-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 322.00 0.47 0.60 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 112.00 0.16 0.21 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1482.00 2.15 2.75 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 63918.00 92.83 118.82 100.0 SNORD69-201 snoRNA K562 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 3353.00 52.00 6.23 94.37 SNORD70-201 snoRNA K562 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 5197.00 2.72 9.66 100.0 B4GALNT2-202 protein coding K562 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 138205.00 72.41 256.92 83.46 B4GALNT2-202 protein coding K562 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 3035.00 88.54 5.64 100.0 NDE1-202 protein coding K562 (Cell line)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 1.00 100.00 0.00 100.0 MIR208B-201 miRNA K562 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 61.00 52.59 0.11 100.0 MIR450B-201 miRNA K562 (Cell line)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 67.00 87.01 0.12 100.0 MIR889-201 miRNA K562 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 13631.00 72.78 25.34 100.0 SNORD111-201 snoRNA K562 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 5108.00 28.78 9.50 52.29 SNORD88A-201 snoRNA K562 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 2563.00 95.92 4.76 100.0 MIR548K-201 miRNA K562 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 406.00 56.23 0.75 100.0 MIR320B2-201 miRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 292975.00 96.78 544.63 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 502.00 0.17 0.93 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1977.00 0.65 3.68 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 369.00 0.12 0.69 100.0 SNORD100-201 snoRNA K562 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 660.00 25.18 1.23 100.0 SNORD111B-201 snoRNA K562 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 447.00 26.53 0.83 100.0 RNU2-36P-201 snRNA K562 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 30.00 1.78 0.06 100.0 RNU2-36P-201 snRNA K562 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 490.00 0.46 0.91 100.0 SNORD19C-201 snoRNA K562 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 84008.00 78.12 156.17 86.14 SNORD19C-201 snoRNA K562 (Cell line)